These plots represent pangenomes created based on the sequenced strains. The heatmaps indicate whether a particular strain has gained a gene (yellow) or lost a gene(dark blue) compared to the reference. The plots at the bottom show the genomic location of genes gained and lost, mapped to a TIGR4 reference
Parent strain is Serotype 9V ID ABC010001831, obtained from the CDC
Parent strain is 15B/C, a carriage isolate from Hungary, ID Pool_hung_H10 (H124)
Parent strain is serotype 22F, ID: ABC010003966, obtained from the CDC (IPD isolate)
Set 1
8, 7F, 7C, 6C, 22F, 19A
Set 2: Parent strain is 15B/C, a carriage isolate from Hungary, ID Pool_hung_H10 (H124)
7F, 6C (2), 35B, 35F (2), 3, 22F, 16F, 15B/C, 11A have the cassette added around 1235484
Set 3: Parent strain is serotype 22F, ID: ABC010003966, obtained from the CDC (IPD isolate)
7F, 6C, 35B, 35F, 3, 22F,16F, 15B.C, 11A (this is the same set of serotypes seen for set 2…are these mislabeled cps genes? cps adjacent genes on these backgrounds? on set 1, some of the serotypes overlap, some do not.